Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs118080035 chr11:11845927 G/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs118107468 chr11:3607776 G/A 0.0003 118 40.67 51.53 16 KM Plot
THYM rs1184840 chr3:55727951 C/G 6.83E-5 118 14.12 48.35 39.75 KM Plot
THYM rs11862923 chr16:24767303 G/T 3.37E-6 119 48 30.03 31.37 KM Plot
THYM rs11862971 chr16:24767574 C/A 3.37E-6 119 48 30.03 31.37 KM Plot
THYM rs11879141 chr19:29320335 G/A 5.15E-11 119 46.6 40.67 12.63 KM Plot
THYM rs11883172 chr19:29318536 C/T 0 118 48 39.5 9.32 KM Plot
THYM rs11885407 chr2:30813169 G/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs11886181 chr2:30806854 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs11892635 chr2:30666904 A/G 1.43E-13 115 38.58 45.87 12.93 KM Plot
THYM rs11896768 chr2:30831119 G/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs11899182 chr2:30716541 A/G 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs11901989 chr2:30688225 A/C 1.29E-8 119 37.37 50.07 33.13 KM Plot
THYM rs11903573 chr2:30758409 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs11904109 chr2:30658543 C/T 0 119 36.4 50.47 12.63 KM Plot